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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22699781_22701260_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22699781 - 22701260
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCTTC
5'SS Class:
major
3'SS Sequence:
GTCTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTTCTCCAACT
Flanking Amino Acid:
LRSWQKAGERGDLMEGELYS
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
69.2
38.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
81.8
0.72
0.8
73
37.3
Minor 5ss
41.6
-0.9
3.3
57.8
47.2
Minor BPS
61.1
0.43
1.9
83.67
36.9

Associated Gene:

Gene:
RNF103
Ensembl Gene ID:
ENSAPLG00000002107
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002173
22699608 - 22715201
15594