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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22711822_22713619_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22711822 - 22713619
Intron Length:
1798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTCT
5'SS Class:
major
3'SS Sequence:
CTTTTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TCTAACTTACCC
Flanking Amino Acid:
TGTFNCSSDPRYCRRRGWLK
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.5
33
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
88.4
0.86
0.6
84.8
22.9
Minor 5ss
48.3
-0.2
2.6
68.1
42.9
Minor BPS
55.2
0.14
1.9
68.02
43.3

Associated Gene:

Gene:
RNF103
Ensembl Gene ID:
ENSAPLG00000002107
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046924
22698638 - 22715676
17039
ENSAPLT00000002173
22699608 - 22715201
15594