Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22713488_22714325_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

22713488 - 22714325

Intron Length:

838

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTACCTGAA

5'SS Class:

weak_major

3'SS Sequence:

GCAGGAAATACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTTTTAC

U12 Branch Point Sequence:

TTACAGGTAACA

Flanking Amino Acid:

HPRSQSGCVRAPKYSLRKNM

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.2

0.08

1.3

53.3

40.2

Major BPS

68.8

0.47

1.2

63.4

Major PPT

50.3

0.01

1.1

40.1

Minor 5ss

37.7

-1.4

3.4

44.2

44.9

Minor BPS

-0.5

2.6

62.8

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028865

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032747

22713356 - 22714853

1498