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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22717987_22718256_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
22717987 - 22718256
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TTCCCTTCCTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
TTCCCAGTAACT
Flanking Amino Acid:
KTPEKPPKEMVNEWSLKIRK
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
59.5
0.21
1.6
72.6
32.1
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
52.4
0.16
2.3
78.66
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001090
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001096
22717458 - 22725050
7593