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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22723953_22724916_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22723953 - 22724916
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTCTTTTTATGT
Flanking Amino Acid:
IDKILFEITAGALGKAPSKV
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
49.3
0.03
1.9
67.28
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001090
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001096
22717458 - 22725050
7593