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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22728897_22729403_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22728897 - 22729403
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTAACTTTAAAT
Flanking Amino Acid:
THTNHEDKLQVKNVIYHAVK
Intron Amino Acid Position:
1303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
86.8
0.83
0.6
81.3
30.7
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
70.7
0.73
1.4
83.2
37.2

Associated Gene:

Gene:
KDM3A
Ensembl Gene ID:
ENSAPLG00000004274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004405
22728369 - 22757301
28933