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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22729799_22731211_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22729799 - 22731211
Intron Length:
1413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTGACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTCCTGACTT
Flanking Amino Acid:
TEKIREFLKKVAEEQGQENP
Intron Amino Acid Position:
1199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
72.3
39.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
77
0.61
0.9
72.7
37.2
Minor 5ss
38.3
-1.3
3.1
50.7
46.2
Minor BPS
69.4
0.69
1.7
88.83
36.2

Associated Gene:

Gene:
KDM3A
Ensembl Gene ID:
ENSAPLG00000004274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004405
22728369 - 22757301
28933