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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22731564_22732341_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22731564 - 22732341
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
CTCTTGCTAACA
Flanking Amino Acid:
DLGPKMYNAYGLITPEDRKY
Intron Amino Acid Position:
1112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.8
42.7
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
34.5
-1.8
3.3
49.5
46.5
Minor BPS
47.1
-0.2
2.3
62.87
43.8

Associated Gene:

Gene:
KDM3A
Ensembl Gene ID:
ENSAPLG00000004274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004405
22728369 - 22757301
28933