About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22732473_22733055_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22732473 - 22733055
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGAATT
5'SS Class:
major
3'SS Sequence:
TGTATCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTCCTAACA
Flanking Amino Acid:
GEDFRDMMPSRFDDLMKNIP
Intron Amino Acid Position:
1068

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
77.6
36.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.3
0.61
0.8
74.4
36.3
Minor 5ss
46
-0.4
2.9
67.5
43.2
Minor BPS
63.9
0.43
1.7
72.9
38.8

Associated Gene:

Gene:
KDM3A
Ensembl Gene ID:
ENSAPLG00000004274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004405
22728369 - 22757301
28933