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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22733797_22734056_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22733797 - 22734056
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGAG
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGGTGTTTAATG
Flanking Amino Acid:
VFRECWKQGQPVMVSGVHHK
Intron Amino Acid Position:
981

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
66.9
38.5
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
88
0.85
0.6
84.7
23
Minor 5ss
38.2
-1.3
3.1
48.8
47.4
Minor BPS
55.3
0.03
1.8
59.33
43.3

Associated Gene:

Gene:
KDM3A
Ensembl Gene ID:
ENSAPLG00000004274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004405
22728369 - 22757301
28933