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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22734294_22735100_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22734294 - 22735100
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACAAT
5'SS Class:
major
3'SS Sequence:
TTCCCTAAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
TTTTCCCTAAAT
Flanking Amino Acid:
RNLLNSSGGKTDNGLKTTPK
Intron Amino Acid Position:
902

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
73
37.8
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
68.1
0.41
1
67.7
36.6
Minor 5ss
46.5
-0.4
2.8
65.5
45.8
Minor BPS
74.9
0.86
1.7
94.58
31.8

Associated Gene:

Gene:
KDM3A
Ensembl Gene ID:
ENSAPLG00000004274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004405
22728369 - 22757301
28933