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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22737774_22737892_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22737774 - 22737892
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AACTACTTAATG
Flanking Amino Acid:
YRMKKKSLNEDDDSDTFSWF
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
80.6
33.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.8
0.72
0.9
75.5
38.4
Minor 5ss
31.6
-2.1
3
39.4
46.1
Minor BPS
60.7
0.2
1.6
60.04
41.8

Associated Gene:

Gene:
KDM3A
Ensembl Gene ID:
ENSAPLG00000004274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004405
22728369 - 22757301
28933