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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22738046_22741156_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22738046 - 22741156
Intron Length:
3111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAGCC
5'SS Class:
major
3'SS Sequence:
TCAATTACCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TTTTGCCAAACC
Flanking Amino Acid:
KEVMSTIEPHKQVAWKRAVR
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
61
36.5
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
68.6
0.42
0.9
61.9
38.4
Minor 5ss
33.9
-1.8
3.4
48.8
41
Minor BPS
50.1
-0
2.4
75.12
41.7

Associated Gene:

Gene:
KDM3A
Ensembl Gene ID:
ENSAPLG00000004274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004405
22728369 - 22757301
28933