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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22741372_22743715_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22741372 - 22743715
Intron Length:
2344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCTAC
U12 Branch Point Sequence:
TTCCCCCTACCC
Flanking Amino Acid:
TVFCRFFHFRRLQFNKHGLL
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
43.7
-0.4
1.2
35.7
31.8
Major PPT
82.1
0.72
0.7
80.6
24.8
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
52
0.04
2
68.84
42.6

Associated Gene:

Gene:
KDM3A
Ensembl Gene ID:
ENSAPLG00000004274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004405
22728369 - 22757301
28933