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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22747142_22749299_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22747142 - 22749299
Intron Length:
2158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
ATCTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGTATTTTAACT
Flanking Amino Acid:
DAKHTKSSPEVSQSQGPVRS
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
86.2
0.81
0.7
81.1
30.2
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
69.8
0.7
1.2
79.52
36.2

Associated Gene:

Gene:
KDM3A
Ensembl Gene ID:
ENSAPLG00000004274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004405
22728369 - 22757301
28933