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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22749389_22749473_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22749389 - 22749473
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGTGCTAAAATG
Flanking Amino Acid:
EIIYDNNGKCDKSKKIGGVK
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
74.3
34.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
82.8
0.74
0.8
74.1
35.2
Minor 5ss
33.2
-1.9
3.4
45.7
43.4
Minor BPS
44.7
-0.5
2
52.32
43

Associated Gene:

Gene:
KDM3A
Ensembl Gene ID:
ENSAPLG00000004274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004405
22728369 - 22757301
28933