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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22754563_22757130_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22754563 - 22757130
Intron Length:
2568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
AGCTATTTACTT
Flanking Amino Acid:
HTDISKPDLKICVEFDDESW
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
74.6
37.4
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
83.7
0.76
0.7
79.4
26.2
Minor 5ss
37.6
-1.4
3.3
50.9
45.8
Minor BPS
48.6
-0
1.8
63.48
41.4

Associated Gene:

Gene:
KDM3A
Ensembl Gene ID:
ENSAPLG00000004274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004405
22728369 - 22757301
28933