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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22797844_22799692_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22797844 - 22799692
Intron Length:
1849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
AGGACATTAACA
Flanking Amino Acid:
AETFTDIFLCWFPFYYELKI
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
58.2
0.25
1.7
65.1
40.5

Associated Gene:

Gene:
REEP1
Ensembl Gene ID:
ENSAPLG00000004849
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022852
22773839 - 22825724
51886
ENSAPLT00000005007
22773839 - 22825724
51886
ENSAPLT00000048151
22773839 - 22825724
51886