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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22799814_22801396_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22799814 - 22801396
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTGTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTATTTATTT
Flanking Amino Acid:
VHPTLSSKEKEIDDCLVQAK
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
37.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.6
0.42
1.1
64
41.6
Minor 5ss
39.7
-1.2
2.8
50.3
45.6
Minor BPS
58.5
0.34
1.8
77.47
39.3

Associated Gene:

Gene:
REEP1
Ensembl Gene ID:
ENSAPLG00000004849
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048151
22773839 - 22825724
51886
ENSAPLT00000022852
22773839 - 22825724
51886
ENSAPLT00000005007
22773839 - 22825724
51886