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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22801511_22810775_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22801511 - 22810775
Intron Length:
9265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GCTTGTTTAACC
Flanking Amino Acid:
ATAAVMAASKGQGALSERLR
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
72.6
0.51
1
66.8
43.1
Minor 5ss
28.9
-2.4
3.3
37.9
46.9
Minor BPS
63.6
0.41
1.8
70.5
41.3

Associated Gene:

Gene:
REEP1
Ensembl Gene ID:
ENSAPLG00000004849
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048151
22773839 - 22825724
51886