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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22810945_22817108_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22810945 - 22817108
Intron Length:
6164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GCTCCTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GAGTTCCTAACG
Flanking Amino Acid:
RSASEGTGSSACTCCSVCRL
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
78.5
0.64
0.8
69
37
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
53.9
-0
1.8
57.89
43.3

Associated Gene:

Gene:
REEP1
Ensembl Gene ID:
ENSAPLG00000004849
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022852
22773839 - 22825724
51886
ENSAPLT00000005007
22773839 - 22825724
51886
ENSAPLT00000048151
22773839 - 22825724
51886