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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22817145_22822723_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
22817145 - 22822723
Intron Length:
5579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCACGTTAAGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACGTTAA
U12 Branch Point Sequence:
TAGCCCGTAACC
Flanking Amino Acid:
TCCSVCRLLRDVKDKYDKYE
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
50.8
0.02
1.2
43.4
39.2
Major PPT
55.3
0.12
1
51.2
36.8
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
57.6
0.22
2.1
69.17
42

Associated Gene:

Gene:
REEP1
Ensembl Gene ID:
ENSAPLG00000004849
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022852
22773839 - 22825724
51886
ENSAPLT00000005007
22773839 - 22825724
51886
ENSAPLT00000048151
22773839 - 22825724
51886