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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22822873_22824120_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22822873 - 22824120
Intron Length:
1248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTCTG
5'SS Class:
major
3'SS Sequence:
TTTGCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
CTGATGATATTT
Flanking Amino Acid:
RPKRKDQPLEAPPRTLRPRF
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
65.7
45.6
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
83.5
0.75
0.8
77.6
31.1
Minor 5ss
36.8
-1.5
3.2
50.2
46
Minor BPS
37.3
-0.8
2.2
52.34
43.2

Associated Gene:

Gene:
REEP1
Ensembl Gene ID:
ENSAPLG00000004849
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022852
22773839 - 22825724
51886
ENSAPLT00000005007
22773839 - 22825724
51886
ENSAPLT00000048151
22773839 - 22825724
51886