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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2283809_2284615_R

Intron Information:

Intron Rank:
145966
Intron Class:
major
Intron Phase:
Intron Coordinates:
2283809 - 2284615
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAAGT
5'SS Class:
major
3'SS Sequence:
TGTTTCATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GCTTGTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
70
40.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
83.9
0.76
0.8
78.2
34.9
Minor 5ss
41.4
-1
2.9
58.6
45.5
Minor BPS
48.1
-0
2.1
67.55
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025948
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029513
2283465 - 2309051
25587