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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22838762_22839752_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22838762 - 22839752
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGTT
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGATATTTATTC
Flanking Amino Acid:
PYSAPMPKKPIQQGPLKISS
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
72.6
38.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.9
0.61
1
75.4
38.6
Minor 5ss
37.3
-1.4
3.6
56.2
48
Minor BPS
49.8
-0
1.7
60.84
38.5

Associated Gene:

Gene:
IMMT
Ensembl Gene ID:
ENSAPLG00000005014
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034756
22838212 - 22851990
13779
ENSAPLT00000018066
22838212 - 22851990
13779
ENSAPLT00000008549
22836534 - 22851638
15105
ENSAPLT00000005176
22838212 - 22851990
13779