Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22839874_22841630_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

22839874 - 22841630

Intron Length:

1757

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACCTTA

5'SS Class:

weak_major

3'SS Sequence:

TCTGCTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTTAC

U12 Branch Point Sequence:

TCTCCAATGAAA

Flanking Amino Acid:

EAVPPAEEKEGKEHEVSHAI

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.2

38.1

Major BPS

68.8

0.47

1.2

63.4

Major PPT

81.3

0.7

0.8

76.7

31.9

Minor 5ss

60.4

0.35

2.4

73.5

43.2

Minor BPS

45.2

-0.3

59.69

39.3

Associated Gene:

Gene:

IMMT

Ensembl Gene ID:

ENSAPLG00000005014

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018066

22838212 - 22851990

13779

ENSAPLT00000008549

22836534 - 22851638

15105