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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22843767_22844827_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22843767 - 22844827
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTCG
5'SS Class:
major
3'SS Sequence:
CTTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CGTGTTATAATT
Flanking Amino Acid:
DEAADALLKAKEELEKTKGV
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
67.8
38.1
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
90.6
0.91
0.7
88.8
26.8
Minor 5ss
48.3
-0.1
2.3
59.1
39.6
Minor BPS
48.6
-0
1.7
64.31
41

Associated Gene:

Gene:
IMMT
Ensembl Gene ID:
ENSAPLG00000005014
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008549
22836534 - 22851638
15105
ENSAPLT00000005176
22838212 - 22851990
13779
ENSAPLT00000034756
22838212 - 22851990
13779
ENSAPLT00000018066
22838212 - 22851990
13779