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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22844964_22846047_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22844964 - 22846047
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TAGCCTTGAAAA
Flanking Amino Acid:
IVDLDNVVKKVQAAQSEAKI
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
85.1
0.79
0.9
80.6
37
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
51.5
0.04
1.5
60.55
38.7

Associated Gene:

Gene:
IMMT
Ensembl Gene ID:
ENSAPLG00000005014
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008549
22836534 - 22851638
15105
ENSAPLT00000005176
22838212 - 22851990
13779
ENSAPLT00000034756
22838212 - 22851990
13779
ENSAPLT00000018066
22838212 - 22851990
13779