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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2284726_2308682_R

Intron Information:

Intron Rank:
145967
Intron Class:
major
Intron Phase:
Intron Coordinates:
2284726 - 2308682
Intron Length:
23957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TACACTTTGAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
53.9
0.12
1.5
60.89
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025948
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029513
2283465 - 2309051
25587