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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22849293_22850043_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22849293 - 22850043
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
CACTTGTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
CGTGGTGTAATT
Flanking Amino Acid:
SEIEIEQEKKVEEVREVMES
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.7
43.1
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
70.4
0.46
1
64.5
41.1
Minor 5ss
35.5
-1.6
3.3
46.8
48.5
Minor BPS
42.4
-0.5
2.3
59.22
45.2

Associated Gene:

Gene:
IMMT
Ensembl Gene ID:
ENSAPLG00000005014
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034756
22838212 - 22851990
13779
ENSAPLT00000018066
22838212 - 22851990
13779
ENSAPLT00000008549
22836534 - 22851638
15105
ENSAPLT00000005176
22838212 - 22851990
13779