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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22850176_22850579_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22850176 - 22850579
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATGTTTCTATTT
Flanking Amino Acid:
EQELKVEFEQNLSEKLSEQE
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
84.6
0.78
0.8
81.9
34.4
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
47.3
-0.1
1.8
65.93
39.6

Associated Gene:

Gene:
IMMT
Ensembl Gene ID:
ENSAPLG00000005014
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034756
22838212 - 22851990
13779
ENSAPLT00000018066
22838212 - 22851990
13779
ENSAPLT00000008549
22836534 - 22851638
15105
ENSAPLT00000005176
22838212 - 22851990
13779