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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22855556_22856018_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22855556 - 22856018
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGAG
5'SS Class:
major
3'SS Sequence:
GATCTTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTGGAATTAACA
Flanking Amino Acid:
LMSRDTHPEETQLAFAKCAE
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
63.9
42.4
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
78
0.63
0.9
72
37.7
Minor 5ss
27.2
-2.6
3.7
36.3
48.1
Minor BPS
54.8
0.15
1.9
69.56
42.4

Associated Gene:

Gene:
PTCD3
Ensembl Gene ID:
ENSAPLG00000005086
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048200
22853346 - 22869782
16437
ENSAPLT00000027135
22852736 - 22870880
18145
ENSAPLT00000025279
22852736 - 22869588
16853
ENSAPLT00000005307
22853346 - 22870256
16911