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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22856105_22856502_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22856105 - 22856502
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTATCTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TCTATCTAAACA
Flanking Amino Acid:
HLEAIPSVWEDMKLLGFNRR
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.2
81.4
32.7
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
70.5
0.46
1
66.3
38.6
Minor 5ss
29.8
-2.3
3.1
40.6
45.6
Minor BPS
61.3
0.35
1.7
71.25
41.2

Associated Gene:

Gene:
PTCD3
Ensembl Gene ID:
ENSAPLG00000005086
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048200
22853346 - 22869782
16437
ENSAPLT00000027135
22852736 - 22870880
18145
ENSAPLT00000025279
22852736 - 22869588
16853
ENSAPLT00000005307
22853346 - 22870256
16911