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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22856594_22856684_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22856594 - 22856684
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
GTTCATTGAAGT
Flanking Amino Acid:
LKWYREMPPSLFYPSPKNIV
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
81.8
31.8
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
82
0.72
0.7
80.4
24.9
Minor 5ss
36.7
-1.5
3.3
49.9
46.4
Minor BPS
47.6
-0.1
1.9
68.31
42

Associated Gene:

Gene:
PTCD3
Ensembl Gene ID:
ENSAPLG00000005086
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027135
22852736 - 22870880
18145
ENSAPLT00000025279
22852736 - 22869588
16853
ENSAPLT00000005307
22853346 - 22870256
16911
ENSAPLT00000048200
22853346 - 22869782
16437