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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22858046_22858542_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22858046 - 22858542
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GTAGCTTTAAAA
Flanking Amino Acid:
ANFFATAMQVCCDLKDIKLA
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
79.7
0.67
0.9
74.1
40.3
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
60.4
0.32
1.5
66.24
39.9

Associated Gene:

Gene:
PTCD3
Ensembl Gene ID:
ENSAPLG00000005086
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027135
22852736 - 22870880
18145
ENSAPLT00000025279
22852736 - 22869588
16853
ENSAPLT00000005307
22853346 - 22870256
16911
ENSAPLT00000048200
22853346 - 22869782
16437