Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22862071_22862356_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22862071 - 22862356

Intron Length:

286

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

TAATGTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

ATTATCTTAATG

Flanking Amino Acid:

YTELLNERHKADVHTFNALI

Intron Amino Acid Position:

267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

67.1

39.6

Major BPS

0.92

0.9

86.2

29.1

Major PPT

80.4

0.68

0.9

77.3

41.3

Minor 5ss

31.3

-2.1

3.3

34.9

41.1

Minor BPS

70.1

0.49

1.3

70.13

37.2

Associated Gene:

Gene:

PTCD3

Ensembl Gene ID:

ENSAPLG00000005086

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027135

22852736 - 22870880

18145

ENSAPLT00000025279

22852736 - 22869588

16853

ENSAPLT00000005307

22853346 - 22870256

16911

ENSAPLT00000048200

22853346 - 22869782

16437