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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22862623_22862908_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22862623 - 22862908
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
TTGTTGATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TGTTTGTTGATT
Flanking Amino Acid:
RGPRSSGSRWRENNDAERIF
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
72
32.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
75
0.56
0.9
67
43.8
Minor 5ss
38.2
-1.3
2.9
48.3
47.4
Minor BPS
57.5
0.32
2.1
78.89
37.8

Associated Gene:

Gene:
PTCD3
Ensembl Gene ID:
ENSAPLG00000005086
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005307
22853346 - 22870256
16911
ENSAPLT00000048200
22853346 - 22869782
16437
ENSAPLT00000027135
22852736 - 22870880
18145
ENSAPLT00000025279
22852736 - 22869588
16853