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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22863851_22864904_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22863851 - 22864904
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCCTCTGACT
Flanking Amino Acid:
VDLFDQLLQAGTPISLETTN
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
68.4
36.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.4
0.73
0.7
78.5
30.1
Minor 5ss
33.7
-1.9
3.1
43.4
44.3
Minor BPS
65
0.55
1.7
85.73
33.8

Associated Gene:

Gene:
PTCD3
Ensembl Gene ID:
ENSAPLG00000005086
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025279
22852736 - 22869588
16853
ENSAPLT00000005307
22853346 - 22870256
16911
ENSAPLT00000048200
22853346 - 22869782
16437
ENSAPLT00000027135
22852736 - 22870880
18145