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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22865029_22865463_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
22865029 - 22865463
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TCTGTGCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
ATGTGCTTAACT
Flanking Amino Acid:
DKILAEPNVPCLMPVTLTPQ
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
72.9
39.3
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
80.6
0.69
0.9
76.9
37.3
Minor 5ss
57
0.24
2.7
79.2
35.5
Minor BPS
72.9
0.8
1.8
86.28
39.8

Associated Gene:

Gene:
PTCD3
Ensembl Gene ID:
ENSAPLG00000005086
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048200
22853346 - 22869782
16437
ENSAPLT00000027135
22852736 - 22870880
18145
ENSAPLT00000025279
22852736 - 22869588
16853
ENSAPLT00000005307
22853346 - 22870256
16911