About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22866808_22867309_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22866808 - 22867309
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCATAA
U12 Branch Point Sequence:
CTCCTTTCTACA
Flanking Amino Acid:
LQTLASTVNRDPTAAHYMFQ
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
65
0.37
1
61.3
37
Major PPT
84.5
0.78
0.7
79.2
26.5
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
44.2
-0.4
1.8
51.84
40.1

Associated Gene:

Gene:
PTCD3
Ensembl Gene ID:
ENSAPLG00000005086
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027135
22852736 - 22870880
18145
ENSAPLT00000025279
22852736 - 22869588
16853
ENSAPLT00000005307
22853346 - 22870256
16911
ENSAPLT00000048200
22853346 - 22869782
16437