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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22869589_22869753_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22869589 - 22869753
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGGTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAC
U12 Branch Point Sequence:
ATACACTGAAAA
Flanking Amino Acid:
MCSSSSTAQK
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
86
24.8
Major BPS
65
0.37
1
73
31.6
Major PPT
75.5
0.57
0.9
68.8
42.1
Minor 5ss
43.1
-0.8
3.1
62.8
42
Minor BPS
48.5
-0.1
1.7
60.45
37.9

Associated Gene:

Gene:
PTCD3
Ensembl Gene ID:
ENSAPLG00000005086
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048200
22853346 - 22869782
16437