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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22871878_22872500_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22871878 - 22872500
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
ACTAGGATAACT
Flanking Amino Acid:
LTVYNPLFFDKLYLLIRGSC
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
87.2
0.84
0.7
80.4
31.6
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
42
-0.5
2.5
63.83
46.1

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971