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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22872651_22872735_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22872651 - 22872735
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TTATCCTTACCT
Flanking Amino Acid:
VHDLEVVLNRFLEQSADATA
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.1
87.5
28.5
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
89.8
0.89
0.6
88
22
Minor 5ss
27.6
-2.6
3.7
35.6
40.5
Minor BPS
79.4
1
1.5
93.01
35.4

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971