About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22875379_22875863_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22875379 - 22875863
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TGATCTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATTTTCTAAAAT
Flanking Amino Acid:
FLDLLVVPPSRYRPVNRIGD
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
72.6
0.51
0.9
66.9
35.2
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
65
0.55
1.7
83.22
37.6

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971