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Intron Name: Anas_platyrhynchos_platyrhynchos_4_22878338_22879118_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22878338 - 22879118

Intron Length:

781

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

CCTTCCTGTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTTAT

U12 Branch Point Sequence:

AACTGGTTATTT

Flanking Amino Acid:

IGTNEIGIPMVFATKLTYPQ

Intron Amino Acid Position:

613

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

73.5

37.2

Major BPS

66.2

0.4

1.3

57.4

49.1

Major PPT

72.4

0.5

0.9

65.2

36.2

Minor 5ss

-1.9

2.9

37.4

41.9

Minor BPS

41.8

-0.5

2.4

58.77

44.9

Associated Gene:

Gene:

POLR1A

Ensembl Gene ID:

ENSAPLG00000013871

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014548

22870646 - 22902616

31971