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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22879347_22882066_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22879347 - 22882066
Intron Length:
2720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
AATTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TAGACATCAACT
Flanking Amino Acid:
SGAPPTGLKIVCRHIKTGDV
Intron Amino Acid Position:
689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
72.6
38.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.8
0.69
0.8
74.2
35.5
Minor 5ss
36.5
-1.5
2.9
48.4
41.7
Minor BPS
52.7
0.16
1.9
72.11
43.9

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971