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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22882850_22883572_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22882850 - 22883572
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTTAT
5'SS Class:
major
3'SS Sequence:
TGCTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AAATAAATAGTT
Flanking Amino Acid:
KPQRLWTGKQVVSTLLINII
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
74.9
38.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
81.4
0.71
0.8
77
31.7
Minor 5ss
46
-0.4
3
66.4
45.1
Minor BPS
40.3
-0.6
2
56.48
39

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971