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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22883717_22884087_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22883717 - 22884087
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAT
U12 Branch Point Sequence:
TTTTCCTGAAGA
Flanking Amino Acid:
LNLDSMCESQVIIRNGELLC
Intron Amino Acid Position:
886

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.3
44.7
Major BPS
68.5
0.46
1
73.3
28.9
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
49.3
-0
2.5
64.5
46.9
Minor BPS
72.2
0.69
1.7
84.45
35.5

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971