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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22884272_22885788_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22884272 - 22885788
Intron Length:
1517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATGAT
U12 Branch Point Sequence:
TCTTCTTTAACA
Flanking Amino Acid:
YLQLYRGFTMGIEDILVKPE
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.5
32.9
Major BPS
72.1
0.55
1.1
62
44.2
Major PPT
83.7
0.76
0.8
80.5
30
Minor 5ss
30.1
-2.3
2.6
28.4
36
Minor BPS
85.8
1.12
0.9
86.93
31.8

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971