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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22885872_22885988_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22885872 - 22885988
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGGCACTTAAAA
Flanking Amino Acid:
IEKSNQHGIEAVRAALNLPE
Intron Amino Acid Position:
975

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.5
40.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.9
0.85
0.8
85.4
34.1
Minor 5ss
37.7
-1.4
3
50.6
39.9
Minor BPS
55.9
0.18
1.7
64.54
40.9

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971